Index (PatOMat2 0.0.1-SNAPSHOT API)

A B C D E F G H I L M N O P R S T U V W
All Classes and Interfaces|All Packages|Constant Field Values|Serialized Form

A

addBinding(String, String, String) - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
addedEntities() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationSummary: Returns the value of the addedEntities record component.
addedStatements() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.OntologyDiff: Returns the value of the addedStatements record component.
addedStatements() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationSummary: Returns the value of the addedStatements record component.
addSession(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.InvalidSessionTracker
ambiguousOntologyException(AmbiguousOntologyException, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
AmbiguousOntologyException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Indicates that we are unable to determine which ontology to use for an operation.
AmbiguousOntologyException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.AmbiguousOntologyException
AppConfig - Class in cz.vse.swoe.ontodeside.patomat2.config
AppConfig() - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.AppConfig
ApplicationConfig - Class in cz.vse.swoe.ontodeside.patomat2.config
ApplicationConfig() - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
ApplicationConfig.Example - Class in cz.vse.swoe.ontodeside.patomat2.config: Configuration of an example transformation input.
ApplicationConfig.LLM - Class in cz.vse.swoe.ontodeside.patomat2.config: LLM configuration.
ApplicationConfig.LLM.Sort - Class in cz.vse.swoe.ontodeside.patomat2.config
ApplicationConfig.Security - Class in cz.vse.swoe.ontodeside.patomat2.config: Security configuration.
apply() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.EntityLabel: Returns the value of the apply record component.
apply(PatternMatch, String) - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.NameTransformationFunction: Applies this function to the specified name transformation rule using the specified pattern match as data context.
applyInternal(PatternMatch, String) - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.HeadNounFunction
applyInternal(PatternMatch, String) - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.LabelFunction
applyInternal(PatternMatch, String) - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.NameTransformationFunction
applyInternal(PatternMatch, String) - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.NominalizeFunction
applyInternal(PatternMatch, String) - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.PassivizeFunction
applyTransformationQuery(String) - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Applies the specified SPARQL Update to the loaded ontology.
applyTransformationQuery(String) - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder

B

basedOnBlankNode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding: Returns the value of the basedOnBlankNode record component.
bindings() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ExampleValues: Returns the value of the bindings record component.

C

cached() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInfo: Returns the value of the cached record component.
capitalize(String[]) - Static method in class cz.vse.swoe.ontodeside.patomat2.util.Utils: Capitalizes the specified tokens in place.
clear() - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Clears the holder, discarding the previously loaded ontology.
clear() - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
clear(HttpSession) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.DataController
clearMatches() - Method in class cz.vse.swoe.ontodeside.patomat2.service.MatchService: Clears the matches.
Constants - Class in cz.vse.swoe.ontodeside.patomat2
containsSession(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.InvalidSessionTracker
createAuthentication(HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.config.SessionCountingAnonymousFilter
createInsertLabelSparql() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity: Creates a SPARQL INSERT query that asserts labels of this new entity.
createInsertSparqlTemplate() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Creates a SPARQL INSERT query to insert data into the target ontology, without setting the variable values.
createLabelFromIdentifier(String) - Static method in class cz.vse.swoe.ontodeside.patomat2.util.Utils: Creates an entity label from its specified identifier.
createTargetDeleteSparql(PatternMatch) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Creates a SPARQL DELETE query to delete data corresponding to the specified pattern match from the target ontology.
createTargetInsertSparql(PatternMatch, List<NewEntity>) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Creates a SPARQL INSERT query to insert data corresponding to the specified pattern match into the target ontology.
createWithMessage(String, String) - Static method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.ErrorInfo: Creates a new instance with the specified message and request URI.
customOpenAPI() - Method in class cz.vse.swoe.ontodeside.patomat2.config.AppConfig
cz.vse.swoe.ontodeside.patomat2 - package cz.vse.swoe.ontodeside.patomat2
cz.vse.swoe.ontodeside.patomat2.config - package cz.vse.swoe.ontodeside.patomat2.config
cz.vse.swoe.ontodeside.patomat2.event - package cz.vse.swoe.ontodeside.patomat2.event
cz.vse.swoe.ontodeside.patomat2.exception - package cz.vse.swoe.ontodeside.patomat2.exception
cz.vse.swoe.ontodeside.patomat2.model - package cz.vse.swoe.ontodeside.patomat2.model
cz.vse.swoe.ontodeside.patomat2.model.function - package cz.vse.swoe.ontodeside.patomat2.model.function
cz.vse.swoe.ontodeside.patomat2.model.iri - package cz.vse.swoe.ontodeside.patomat2.model.iri
cz.vse.swoe.ontodeside.patomat2.rest - package cz.vse.swoe.ontodeside.patomat2.rest
cz.vse.swoe.ontodeside.patomat2.rest.handler - package cz.vse.swoe.ontodeside.patomat2.rest.handler
cz.vse.swoe.ontodeside.patomat2.service - package cz.vse.swoe.ontodeside.patomat2.service
cz.vse.swoe.ontodeside.patomat2.service.pattern - package cz.vse.swoe.ontodeside.patomat2.service.pattern
cz.vse.swoe.ontodeside.patomat2.service.rdf4j - package cz.vse.swoe.ontodeside.patomat2.service.rdf4j
cz.vse.swoe.ontodeside.patomat2.service.sort - package cz.vse.swoe.ontodeside.patomat2.service.sort
cz.vse.swoe.ontodeside.patomat2.util - package cz.vse.swoe.ontodeside.patomat2.util

D

DataController - Class in cz.vse.swoe.ontodeside.patomat2.rest
DataController() - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.DataController
datatype() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding: Returns the value of the datatype record component.
deepCopy() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance
DEFAULT_LABEL_PROPERTY - Static variable in class cz.vse.swoe.ontodeside.patomat2.Constants: Default property for new entity labels
deleteFile(String, String) - Method in class cz.vse.swoe.ontodeside.patomat2.service.FileStorageService: Deletes the specified file if it exists.
difference(File) - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Calculates the difference of the loaded and the specified ontologies.
difference(File) - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
doFilter(ServletRequest, ServletResponse, FilterChain) - Method in class cz.vse.swoe.ontodeside.patomat2.config.SessionCountingAnonymousFilter
downloadAndSaveFile(String) - Method in class cz.vse.swoe.ontodeside.patomat2.service.FileStorageService: Downloads file from the specified URL and stores it in the configured storage directory.

E

EntityIriLocalNameFormat - Enum Class in cz.vse.swoe.ontodeside.patomat2.model.iri: Format of the local name of an entity IRI.
EntityIriLocalNameGenerator - Class in cz.vse.swoe.ontodeside.patomat2.model.iri: Generates local name for new IRI.
EntityIriLocalNameGenerator() - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameGenerator
EntityLabel - Record Class in cz.vse.swoe.ontodeside.patomat2.model: Representation of an entity label.
EntityLabel(String, String) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.EntityLabel
EntityLabel(String, String, boolean) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.EntityLabel: Creates an instance of a EntityLabel record class.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.EntityLabel: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ExampleValues: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.iri.NewEntityIriConfig: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.LoadedTransformationInput: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NameTransformation: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.OntologyDiff: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInfo: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.RemotePattern: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationInput: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationResult: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationSummary: Indicates whether some other object is "equal to" this one.
equals(Object) - Method in record class cz.vse.swoe.ontodeside.patomat2.rest.SortController.SortDto: Indicates whether some other object is "equal to" this one.
ErrorInfo - Class in cz.vse.swoe.ontodeside.patomat2.rest.handler: Contains information about an error and can be sent to client as JSON to let him know what is wrong.
ErrorInfo(String, String) - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.handler.ErrorInfo
Example() - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example
Example(String, String, List<String>, boolean) - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example
ExampleController - Class in cz.vse.swoe.ontodeside.patomat2.rest
ExampleController(ExampleService) - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.ExampleController
examples() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Returns the value of the examples record component.
ExampleService - Class in cz.vse.swoe.ontodeside.patomat2.service: Manages access to transformation examples.
ExampleService(OntologyStoringService, ApplicationConfig) - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.ExampleService
ExampleValues - Record Class in cz.vse.swoe.ontodeside.patomat2.model: Examples binding values for a pattern.
ExampleValues(List<ResultBinding>) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.ExampleValues: Creates an instance of a ExampleValues record class.
export(String) - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Exports the currently loaded ontology.
export(String) - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
extractLocalPart(String) - Static method in class cz.vse.swoe.ontodeside.patomat2.util.Utils: Extracts local part of the specified URI/IRI identifier.
extractSparqlVariables(String) - Static method in class cz.vse.swoe.ontodeside.patomat2.util.Utils: Extracts SPARQL variables from the specified string.

F

FileAwareByteArrayResource - Class in cz.vse.swoe.ontodeside.patomat2.util
FileAwareByteArrayResource(byte[], String) - Constructor for class cz.vse.swoe.ontodeside.patomat2.util.FileAwareByteArrayResource
fileName() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Returns the value of the fileName record component.
fileName() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInfo: Returns the value of the fileName record component.
filenameToMimeType(String) - Static method in class cz.vse.swoe.ontodeside.patomat2.util.Utils: Determines MIME type from the specified file name.
FileStorageService - Class in cz.vse.swoe.ontodeside.patomat2.service
FileStorageService(ApplicationConfig, HttpSession) - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.FileStorageService
filterChain(HttpSecurity) - Method in class cz.vse.swoe.ontodeside.patomat2.config.SecurityConfig
filters() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Returns the value of the filters record component.
findMatches() - Method in class cz.vse.swoe.ontodeside.patomat2.service.MatchService: Finds matches of the provided patterns in the provided ontology.
findMatches(Pattern) - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Finds matches of the specified pattern in the loaded ontology.
findMatches(Pattern) - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
findMatches(Sort) - Method in class cz.vse.swoe.ontodeside.patomat2.service.MatchService: Finds matches of the provided patterns in the provided ontology and returns them sorted using the specified sorting method.
fromValue(String) - Static method in enum class cz.vse.swoe.ontodeside.patomat2.service.sort.Sort

G

generateIdentifier(List<EntityLabel>) - Method in interface cz.vse.swoe.ontodeside.patomat2.model.NewEntityGenerator: Generates a new identifier for an entity with the specified labels.
generateIdentifier(List<EntityLabel>) - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jNewEntityGenerator
generateLocalName(EntityIriLocalNameFormat, List<EntityLabel>) - Static method in class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameGenerator: Generates local name for an entity IRI, based on the specified format.
generateName(PatternMatch, OntologyHolder) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NameTransformation: Generates a new entity name based on the transformation rule using the provided data.
generateNewEntity(String, List<NameTransformation>, PatternMatch) - Method in interface cz.vse.swoe.ontodeside.patomat2.model.NewEntityGenerator: Generates a new entity with label(s) based on the specified pattern match and name transformations.
generateNewEntity(String, List<NameTransformation>, PatternMatch) - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jNewEntityGenerator
getApiUrl() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
getApplicationLog() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.LogViewerController
getApplicationLog() - Method in class cz.vse.swoe.ontodeside.patomat2.service.LogViewerService: Gets the contents of the application log file.
getAvailablePatterns() - Method in class cz.vse.swoe.ontodeside.patomat2.service.pattern.PatternCache: Gets available cached patterns.
getBatchSize() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
getBinding(PatternMatch, String) - Static method in class cz.vse.swoe.ontodeside.patomat2.model.function.NameTransformationFunction
getBinding(String) - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
getBindings() - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
getCorsAllowedOrigins() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
getExamples() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
getExamples() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.ExampleController
getExamples() - Method in class cz.vse.swoe.ontodeside.patomat2.service.ExampleService: Gets a list of available examples.
getFile(String) - Method in class cz.vse.swoe.ontodeside.patomat2.service.FileStorageService: Retrieves a file from the configured storage directory.
getFilename() - Method in class cz.vse.swoe.ontodeside.patomat2.util.FileAwareByteArrayResource
getId() - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternInstanceTransformation
getIriConfig() - Method in interface cz.vse.swoe.ontodeside.patomat2.model.NewEntityGenerator: Gets the current configuration for generating new entity identifiers.
getIriConfig() - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jNewEntityGenerator
getLabel(String) - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Resolves label of a resource with the specified iri.
getLabel(String) - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
getLlm() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
getMatches() - Method in class cz.vse.swoe.ontodeside.patomat2.service.MatchService
getMatches(String) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.PatternMatchesController
getMaxConcurrentRequests() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
getMaxInstances() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
getMaxSessions() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Security
getMessage() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.ErrorInfo
getModel() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
getName() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example
getName() - Method in enum class cz.vse.swoe.ontodeside.patomat2.service.sort.Sort
getNewEntityIriBase() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
getNewEntityIriConfig() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.NewEntityIdentifierController
getNewEntityIriConfig() - Method in class cz.vse.swoe.ontodeside.patomat2.service.MatchService
getNewEntityLabels() - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternInstanceTransformation
getNLPPipeline() - Static method in class cz.vse.swoe.ontodeside.patomat2.util.NLPUtils: Gets a NLP pipeline.
getNounsToVerbs() - Static method in class cz.vse.swoe.ontodeside.patomat2.util.NLPUtils
getNumCtx() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
getOntology() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example
getOntologyFile() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.OntologyStoringController
getOntologyFile() - Method in class cz.vse.swoe.ontodeside.patomat2.service.OntologyStoringService: Gets the uploaded ontology file as File.
getOntologyFileContent() - Method in class cz.vse.swoe.ontodeside.patomat2.service.OntologyStoringService: Gets the stored ontology file.
getOntologyFileName() - Method in class cz.vse.swoe.ontodeside.patomat2.event.OntologyFileUploadedEvent
getOntologyIri() - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Resolves IRI of the loaded ontology, if available.
getOntologyIri() - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
getPattern() - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.HeadNounFunction
getPattern() - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.LabelFunction
getPattern() - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.NameTransformationFunction
getPattern() - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.NominalizeFunction
getPattern() - Method in class cz.vse.swoe.ontodeside.patomat2.model.function.PassivizeFunction
getPattern() - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
getPattern(String) - Method in class cz.vse.swoe.ontodeside.patomat2.service.pattern.PatternCache: Gets a cached pattern with the specified URL.
getPatternInstances() - Method in class cz.vse.swoe.ontodeside.patomat2.model.TransformationSpecification
getPatterns() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example
getPatterns() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
getPatterns() - Method in class cz.vse.swoe.ontodeside.patomat2.event.OntologyFileUploadedEvent
getPredefinedPatterns() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.PatternController
getRequestUri() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.ErrorInfo
getSecurity() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
getSort() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM
getSortMethod() - Method in class cz.vse.swoe.ontodeside.patomat2.service.sort.OllamaLikertSorter
getSortMethod() - Method in interface cz.vse.swoe.ontodeside.patomat2.service.sort.PatternInstanceSorter: Returns the sort method supported by this implementation.
getSortMethod() - Method in class cz.vse.swoe.ontodeside.patomat2.service.sort.RandomShuffleSorter
getSortMethods() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.SortController
getStorage() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
getTransformationInput() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.OntologyStoringController
getTransformationInput() - Method in class cz.vse.swoe.ontodeside.patomat2.service.OntologyStoringService: Gets the stored transformation input.
getTransformedOntology() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.TransformationController
getTransformedOntology() - Method in class cz.vse.swoe.ontodeside.patomat2.service.TransformationService: Gets the last transformed ontology.
getTransformedOntology() - Method in class cz.vse.swoe.ontodeside.patomat2.service.TransformedOntologyHolder
getUploadedOntologyFileName() - Method in class cz.vse.swoe.ontodeside.patomat2.service.OntologyStoringService: Checks whether an ontology file has been uploaded.
getValue() - Method in enum class cz.vse.swoe.ontodeside.patomat2.service.sort.Sort
getVariables() - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
getVerbsToNouns() - Static method in class cz.vse.swoe.ontodeside.patomat2.util.NLPUtils

H

hasDelete() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.EntityLabel: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ExampleValues: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.iri.NewEntityIriConfig: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.LoadedTransformationInput: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NameTransformation: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.OntologyDiff: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInfo: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Returns a hash code value for this object.
hashCode() - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.RemotePattern: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationInput: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationResult: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationSummary: Returns a hash code value for this object.
hashCode() - Method in record class cz.vse.swoe.ontodeside.patomat2.rest.SortController.SortDto: Returns a hash code value for this object.
HeadNounFunction - Class in cz.vse.swoe.ontodeside.patomat2.model.function: Extracts head noun from the specified argument.
HeadNounFunction(OntologyHolder, NameTransformationFunction) - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.function.HeadNounFunction

I

id() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Returns the value of the id record component.
identifier() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity: Returns the value of the identifier record component.
illegalStateException(IllegalStateException, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
incompleteTransformationInputException(IncompleteTransformationInputException, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
IncompleteTransformationInputException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Indicates that the transformation input is incomplete.
IncompleteTransformationInputException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.IncompleteTransformationInputException
info() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Generates a PatternInfo object for this pattern.
init() - Static method in class cz.vse.swoe.ontodeside.patomat2.util.NLPUtils
Initializer - Class in cz.vse.swoe.ontodeside.patomat2.service: Initializes the application, performing post-startup tasks.
Initializer(ApplicationConfig, ApplicationContext) - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.Initializer
initNewEntityIriConfig() - Method in interface cz.vse.swoe.ontodeside.patomat2.model.NewEntityGenerator: Initializes new entity identifier generation configuration.
initNewEntityIriConfig() - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jNewEntityGenerator
initNLPPipeline() - Method in class cz.vse.swoe.ontodeside.patomat2.PatOMat2Application
invalidFileException(InvalidFileException, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
InvalidFileException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Indicates that an uploaded file is invalid.
InvalidFileException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.InvalidFileException
InvalidSessionTracker - Class in cz.vse.swoe.ontodeside.patomat2.config
InvalidSessionTracker() - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.InvalidSessionTracker
isApplyDeletes() - Method in class cz.vse.swoe.ontodeside.patomat2.model.TransformationSpecification
isBasedOnBlankNode() - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
isEmpty() - Method in class cz.vse.swoe.ontodeside.patomat2.service.TransformedOntologyHolder
isLoaded() - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Checks whether any ontology has been loaded by this holder.
isLoaded() - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
isLoadedWithImports() - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Returns true if the ontology was loaded including its imports.
isLoadedWithImports() - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
isOntologyUploaded() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.OntologyStoringController
isResolveImports() - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example

L

label() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding: Returns the value of the label record component.
LABEL_CAMEL_CASE - Enum constant in enum class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameFormat: Entity label formatted to camelCase and appended to the namespace
LABEL_KEBAB_CASE - Enum constant in enum class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameFormat: Entity label formatted to kebab-case and appended to the namespace
LABEL_PASCAL_CASE - Enum constant in enum class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameFormat: Entity label formatted to PascalCase and appended to the namespace
LABEL_SNAKE_CASE - Enum constant in enum class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameFormat: Entity label formatted to snake_case and appended to the namespace
LabelFunction - Class in cz.vse.swoe.ontodeside.patomat2.model.function: Function for resolving label of a resource.
LabelFunction(OntologyHolder, NameTransformationFunction) - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.function.LabelFunction
labels() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity: Returns the value of the labels record component.
likertScore() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Returns the value of the likertScore record component.
LLM() - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM
LLM_LIKERT - Enum constant in enum class cz.vse.swoe.ontodeside.patomat2.service.sort.Sort: Sort using an LLM call with a Likert scale.
llmSortException(LlmSortException, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
LlmSortException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Indicates that the LLM-based sorting failed.
LlmSortException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.LlmSortException
LoadedTransformationInput - Record Class in cz.vse.swoe.ontodeside.patomat2.model: Information about the loaded transformation input.
LoadedTransformationInput(String, List<PatternInfo>) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.LoadedTransformationInput: Creates an instance of a LoadedTransformationInput record class.
loadExample(String) - Method in class cz.vse.swoe.ontodeside.patomat2.service.ExampleService: Loads the ontology and patterns specified in example with the given name.
loadExamples(String) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.ExampleController
loadOntology(File, boolean) - Method in interface cz.vse.swoe.ontodeside.patomat2.service.OntologyHolder: Loads ontology from the specified file.
loadOntology(File, boolean) - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
loadPatterns(List<String>) - Method in class cz.vse.swoe.ontodeside.patomat2.service.pattern.PatternCache: Loads patterns into the cache from the specified URLs.
localNameFormat() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.iri.NewEntityIriConfig: Returns the value of the localNameFormat record component.
LogViewerController - Class in cz.vse.swoe.ontodeside.patomat2.rest
LogViewerController(LogViewerService) - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.LogViewerController
LogViewerService - Class in cz.vse.swoe.ontodeside.patomat2.service: Allows viewing application log.
LogViewerService() - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.LogViewerService

M

main(String[]) - Static method in class cz.vse.swoe.ontodeside.patomat2.PatOMat2Application
match() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Returns the value of the match record component.
MatchService - Class in cz.vse.swoe.ontodeside.patomat2.service: Finds and applies pattern matches in ontology.
MatchService(FileStorageService, OntologyHolder, NewEntityGenerator, List<PatternInstanceSorter>) - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.MatchService
maxSortableInstancesThresholdExceededException(MaxSortableInstancesThresholdExceededException, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
MaxSortableInstancesThresholdExceededException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Indicates that the client requested too many pattern instances to be sorted.
MaxSortableInstancesThresholdExceededException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.MaxSortableInstancesThresholdExceededException

N

name() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Returns the value of the name record component.
name() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInfo: Returns the value of the name record component.
name() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.RemotePattern: Returns the value of the name record component.
name() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding: Returns the value of the name record component.
name() - Method in record class cz.vse.swoe.ontodeside.patomat2.rest.SortController.SortDto: Returns the value of the name record component.
namespace() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.iri.NewEntityIriConfig: Returns the value of the namespace record component.
NameTransformation - Record Class in cz.vse.swoe.ontodeside.patomat2.model: Describes how a new entity name should be created based the transformation rule.
NameTransformation(String, String) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.NameTransformation: Creates an instance of a NameTransformation record class.
NameTransformationException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Thrown when entity name transformation fails.
NameTransformationException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.NameTransformationException
NameTransformationFunction - Class in cz.vse.swoe.ontodeside.patomat2.model.function
NameTransformationFunction(OntologyHolder, NameTransformationFunction) - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.function.NameTransformationFunction
nameTransformations() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Returns the value of the nameTransformations record component.
newEntities() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Returns the value of the newEntities record component.
NewEntity - Record Class in cz.vse.swoe.ontodeside.patomat2.model
NewEntity(String, String, List<EntityLabel>) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity: Creates an instance of a NewEntity record class.
NewEntityGenerator - Interface in cz.vse.swoe.ontodeside.patomat2.model: Generates new entities (RDF resources) to be inserted as part of transformation.
NewEntityIdentifierController - Class in cz.vse.swoe.ontodeside.patomat2.rest
NewEntityIdentifierController(MatchService) - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.NewEntityIdentifierController
NewEntityIriConfig - Record Class in cz.vse.swoe.ontodeside.patomat2.model.iri: Configuration of new entity IRI generation.
NewEntityIriConfig(String, EntityIriLocalNameFormat) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.iri.NewEntityIriConfig: Creates an instance of a NewEntityIriConfig record class.
newEntityVariables() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern
NLPUtils - Class in cz.vse.swoe.ontodeside.patomat2.util: NLP pipeline provider.
NominalizeFunction - Class in cz.vse.swoe.ontodeside.patomat2.model.function: Nominalizes a verb in the specified argument.
NominalizeFunction(OntologyHolder, NameTransformationFunction) - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.function.NominalizeFunction
notFoundException() - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
NotFoundException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception
NotFoundException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.NotFoundException

O

OllamaLikertSorter - Class in cz.vse.swoe.ontodeside.patomat2.service.sort: Sorts patterns instances by their likelihood of "making sense" using a Likert scale.
OllamaLikertSorter(ApplicationConfig, RestTemplate) - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.sort.OllamaLikertSorter
onOntologyFileUploaded(OntologyFileUploadedEvent) - Method in class cz.vse.swoe.ontodeside.patomat2.service.MatchService
ontology() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.LoadedTransformationInput: Returns the value of the ontology record component.
ontology() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationInput: Returns the value of the ontology record component.
ontology() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationResult: Returns the value of the ontology record component.
ONTOLOGY_FILE_SESSION_ATTRIBUTE - Static variable in class cz.vse.swoe.ontodeside.patomat2.Constants: HTTP session attribute name for stored ontology file.
OntologyDiff - Record Class in cz.vse.swoe.ontodeside.patomat2.model: Difference between ontologies.
OntologyDiff(String, String) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.OntologyDiff: Creates an instance of a OntologyDiff record class.
OntologyFileUploadedEvent - Class in cz.vse.swoe.ontodeside.patomat2.event: Indicates that an ontology file has been uploaded.
OntologyFileUploadedEvent(Object, String, List<Pattern>, boolean) - Constructor for class cz.vse.swoe.ontodeside.patomat2.event.OntologyFileUploadedEvent
ontologyHolder - Variable in class cz.vse.swoe.ontodeside.patomat2.model.function.NameTransformationFunction
OntologyHolder - Interface in cz.vse.swoe.ontodeside.patomat2.service: Manages ontology and allows finding matches in it.
ontologyReadException(OntologyReadException, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
OntologyReadException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception
OntologyReadException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.OntologyReadException
OntologyReadException(String, Throwable) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.OntologyReadException
OntologyStoringController - Class in cz.vse.swoe.ontodeside.patomat2.rest
OntologyStoringController(OntologyStoringService) - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.OntologyStoringController
OntologyStoringService - Class in cz.vse.swoe.ontodeside.patomat2.service
OntologyStoringService(FileStorageService, PatternCache, PatternParser, HttpSession) - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.OntologyStoringService

P

PassivizeFunction - Class in cz.vse.swoe.ontodeside.patomat2.model.function: Finds a verb in the specified argument and returns it in a passive form.
PassivizeFunction(OntologyHolder, NameTransformationFunction) - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.function.PassivizeFunction
passwordEncoder() - Method in class cz.vse.swoe.ontodeside.patomat2.config.AppConfig
PatOMat2Application - Class in cz.vse.swoe.ontodeside.patomat2
PatOMat2Application() - Constructor for class cz.vse.swoe.ontodeside.patomat2.PatOMat2Application
patomat2Exception(PatOMat2Exception, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
PatOMat2Exception - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Base exception for PatOMat2.
PatOMat2Exception(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.PatOMat2Exception
PatOMat2Exception(String, Throwable) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.PatOMat2Exception
PatOMat2Exception(Throwable) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.PatOMat2Exception
pattern() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Returns the value of the pattern record component.
Pattern - Record Class in cz.vse.swoe.ontodeside.patomat2.model
Pattern(String, String, List<String>, List<String>, List<String>, List<NameTransformation>, List<ExampleValues>) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Creates an instance of a Pattern record class.
PATTERN_FILES_SESSION_ATTRIBUTE - Static variable in class cz.vse.swoe.ontodeside.patomat2.Constants: HTTP session attribute name for stored patterns.
PatternCache - Class in cz.vse.swoe.ontodeside.patomat2.service.pattern: Cache for predefined patterns specified in configuration.
PatternCache(PatternParser) - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.pattern.PatternCache
PatternController - Class in cz.vse.swoe.ontodeside.patomat2.rest
PatternController(PatternCache) - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.PatternController
PatternInfo - Record Class in cz.vse.swoe.ontodeside.patomat2.model: Information about a loaded pattern.
PatternInfo(String, String, boolean) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.PatternInfo: Creates an instance of a PatternInfo record class.
PatternInstance - Record Class in cz.vse.swoe.ontodeside.patomat2.model
PatternInstance(int, Pattern, PatternMatch, String, String, List<NewEntity>) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance
PatternInstance(int, Pattern, PatternMatch, String, String, List<NewEntity>, Integer) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Creates an instance of a PatternInstance record class.
PatternInstanceSorter - Interface in cz.vse.swoe.ontodeside.patomat2.service.sort: Sorter of pattern instances.
PatternInstanceTransformation - Class in cz.vse.swoe.ontodeside.patomat2.model: Specifies how a pattern instance should be transformed.
PatternInstanceTransformation() - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.PatternInstanceTransformation
PatternMatch - Class in cz.vse.swoe.ontodeside.patomat2.model
PatternMatch() - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
PatternMatch(Pattern, List<ResultBinding>) - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
PatternMatchesController - Class in cz.vse.swoe.ontodeside.patomat2.rest
PatternMatchesController(MatchService) - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.PatternMatchesController
patternName() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance
PatternParser - Class in cz.vse.swoe.ontodeside.patomat2.service.pattern: Reads pattern files, extracting the patterns they contain.
PatternParser() - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.pattern.PatternParser
PatternParserException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Indicates that the system was unable to resolve a pattern.
PatternParserException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.PatternParserException
PatternParserException(String, Throwable) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.PatternParserException
patterns() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.LoadedTransformationInput: Returns the value of the patterns record component.
patterns() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationInput: Returns the value of the patterns record component.
populateSparqlUpdate(String, PatternMatch) - Static method in class cz.vse.swoe.ontodeside.patomat2.util.Rdf4jSparqlQueryBuilder: Takes a SPARQL Update (INSERT/DELETE) statement and PatternMatch instance and returns a query string where variables in the query are bound to the values in the PatternMatch.
property() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.EntityLabel: Returns the value of the property record component.

R

RANDOM - Enum constant in enum class cz.vse.swoe.ontodeside.patomat2.service.sort.Sort: Random shuffle of pattern matches.
RANDOM_NUMBER - Enum constant in enum class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameFormat: Random number appended to the namespace
RandomShuffleSorter - Class in cz.vse.swoe.ontodeside.patomat2.service.sort: Sorts pattern instances using random shuffle.
RandomShuffleSorter() - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.sort.RandomShuffleSorter
Rdf4jNewEntityGenerator - Class in cz.vse.swoe.ontodeside.patomat2.service.rdf4j: Generates new entities (RDF resources) using the loaded ontology.
Rdf4jNewEntityGenerator(OntologyHolder, ApplicationConfig) - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jNewEntityGenerator
Rdf4jOntologyHolder - Class in cz.vse.swoe.ontodeside.patomat2.service.rdf4j
Rdf4jOntologyHolder() - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jOntologyHolder
Rdf4jSparqlQueryBuilder - Class in cz.vse.swoe.ontodeside.patomat2.util
Rdf4jSparqlQueryBuilder() - Constructor for class cz.vse.swoe.ontodeside.patomat2.util.Rdf4jSparqlQueryBuilder
RDFS_RESOURCE - Static variable in class cz.vse.swoe.ontodeside.patomat2.Constants: RDFS Resource
readClasspathResource(String, Consumer<String>) - Static method in class cz.vse.swoe.ontodeside.patomat2.util.Utils: Reads a resource from the classpath and applies the specified consumer to each line.
readPattern(File) - Method in class cz.vse.swoe.ontodeside.patomat2.service.pattern.PatternParser: Reads pattern from the specified file.
readPattern(InputStream) - Method in class cz.vse.swoe.ontodeside.patomat2.service.pattern.PatternParser: Reads pattern from the InputStream.
RemotePattern - Record Class in cz.vse.swoe.ontodeside.patomat2.model: Information about a pattern fetched from a remote URL
RemotePattern(String, String) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.RemotePattern: Creates an instance of a RemotePattern record class.
removedStatements() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.OntologyDiff: Returns the value of the removedStatements record component.
removedStatements() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationSummary: Returns the value of the removedStatements record component.
removeSession(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.InvalidSessionTracker
resolveImports() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationInput: Returns the value of the resolveImports record component.
resourceFetchException(ResourceFetchException, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
ResourceFetchException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Indicates that a resource cannot be fetched over the internet.
ResourceFetchException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.ResourceFetchException
restClientBuilder() - Method in class cz.vse.swoe.ontodeside.patomat2.config.AppConfig
RestExceptionHandler - Class in cz.vse.swoe.ontodeside.patomat2.rest.handler
RestExceptionHandler() - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
restTemplate() - Method in class cz.vse.swoe.ontodeside.patomat2.config.AppConfig
ResultBinding - Record Class in cz.vse.swoe.ontodeside.patomat2.model
ResultBinding(String, String, String) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding
ResultBinding(String, String, String, boolean) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding
ResultBinding(String, String, String, boolean, Optional<String>) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding: Creates an instance of a ResultBinding record class.
rule() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NameTransformation: Returns the value of the rule record component.
run(String...) - Method in class cz.vse.swoe.ontodeside.patomat2.service.Initializer

S

saveFile(MultipartFile) - Method in class cz.vse.swoe.ontodeside.patomat2.service.FileStorageService: Stores the specified file.
saveOntologyAndPatterns(TransformationInput) - Method in class cz.vse.swoe.ontodeside.patomat2.service.OntologyStoringService: Saves ontology and patterns that are specified as URLs from which they are to be loaded.
saveOntologyAndPatterns(MultipartFile, List<MultipartFile>, TransformationInput) - Method in class cz.vse.swoe.ontodeside.patomat2.service.OntologyStoringService: Saves ontology and patterns for transformation.
Security() - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Security
SecurityConfig - Class in cz.vse.swoe.ontodeside.patomat2.config
SecurityConfig(ApplicationConfig, InvalidSessionTracker, ObjectMapper, PasswordEncoder) - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.SecurityConfig
SESSION_TIMEOUT - Static variable in class cz.vse.swoe.ontodeside.patomat2.Constants: Session timeout in seconds.
SessionCleanupListener - Class in cz.vse.swoe.ontodeside.patomat2.config: Cleans user data up after session ends.
SessionCleanupListener(ApplicationConfig, InvalidSessionTracker, FileStorageService) - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.SessionCleanupListener
SessionCountingAnonymousFilter - Class in cz.vse.swoe.ontodeside.patomat2.config
SessionCountingAnonymousFilter(String, InvalidSessionTracker, ObjectMapper) - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.SessionCountingAnonymousFilter
sessionCreated(HttpSessionEvent) - Method in class cz.vse.swoe.ontodeside.patomat2.config.SessionCleanupListener
sessionDestroyed(HttpSessionEvent) - Method in class cz.vse.swoe.ontodeside.patomat2.config.SessionCleanupListener
sessionListener(ApplicationConfig, InvalidSessionTracker, FileStorageService) - Method in class cz.vse.swoe.ontodeside.patomat2.config.AppConfig
setApiUrl(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
setApplicationEventPublisher(ApplicationEventPublisher) - Method in class cz.vse.swoe.ontodeside.patomat2.service.OntologyStoringService
setApplyDeletes(boolean) - Method in class cz.vse.swoe.ontodeside.patomat2.model.TransformationSpecification
setBatchSize(int) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
setBindings(List<ResultBinding>) - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
setCorsAllowedOrigins(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
setExamples(List<ApplicationConfig.Example>) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
setId(Integer) - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternInstanceTransformation
setIriConfig(NewEntityIriConfig) - Method in interface cz.vse.swoe.ontodeside.patomat2.model.NewEntityGenerator: Sets configuration for generating new entity identifiers.
setIriConfig(NewEntityIriConfig) - Method in class cz.vse.swoe.ontodeside.patomat2.service.rdf4j.Rdf4jNewEntityGenerator
setLlm(ApplicationConfig.LLM) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
setMaxConcurrentRequests(int) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
setMaxInstances(int) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
setMaxSessions(int) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Security
setMessage(String) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.ErrorInfo
setModel(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
setName(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example
setNewEntityIriBase(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
setNewEntityIriConfig(NewEntityIriConfig) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.NewEntityIdentifierController
setNewEntityIriConfig(NewEntityIriConfig) - Method in class cz.vse.swoe.ontodeside.patomat2.service.MatchService
setNewEntityLabels(Map<String, List<EntityLabel>>) - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternInstanceTransformation
setNumCtx(int) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
setOntology(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example
setPattern(Pattern) - Method in class cz.vse.swoe.ontodeside.patomat2.model.PatternMatch
setPatternInstances(List<PatternInstanceTransformation>) - Method in class cz.vse.swoe.ontodeside.patomat2.model.TransformationSpecification
setPatterns(List<String>) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example
setPatterns(List<String>) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
setRequestUri(String) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.ErrorInfo
setResolveImports(boolean) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.Example
setSecurity(ApplicationConfig.Security) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
setSort(ApplicationConfig.LLM.Sort) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM
setStorage(String) - Method in class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig
setTransformedOntology(Resource) - Method in class cz.vse.swoe.ontodeside.patomat2.service.TransformedOntologyHolder
shouldResolveImports() - Method in class cz.vse.swoe.ontodeside.patomat2.event.OntologyFileUploadedEvent
sort(List<PatternInstance>) - Method in class cz.vse.swoe.ontodeside.patomat2.service.sort.OllamaLikertSorter
sort(List<PatternInstance>) - Method in interface cz.vse.swoe.ontodeside.patomat2.service.sort.PatternInstanceSorter: Sorts the specified pattern instances using the method supported by this implementation.
sort(List<PatternInstance>) - Method in class cz.vse.swoe.ontodeside.patomat2.service.sort.RandomShuffleSorter
Sort - Enum Class in cz.vse.swoe.ontodeside.patomat2.service.sort: Options for sorting pattern matches.
Sort() - Constructor for class cz.vse.swoe.ontodeside.patomat2.config.ApplicationConfig.LLM.Sort
SortController - Class in cz.vse.swoe.ontodeside.patomat2.rest
SortController() - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.SortController
SortController.SortDto - Record Class in cz.vse.swoe.ontodeside.patomat2.rest
SortDto(Sort) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.rest.SortController.SortDto
SortDto(String, String) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.rest.SortController.SortDto: Creates an instance of a SortDto record class.
sourceSparql() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Creates a SPARQL SELECT query to find instances of this pattern in the source ontology.
sourceTriples() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Returns the value of the sourceTriples record component.
sourceVariables() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern
SPARQL_VARIABLE - Static variable in class cz.vse.swoe.ontodeside.patomat2.Constants: Prefix of a SPARQL variable
SPARQL_VARIABLE_PATTERN - Static variable in class cz.vse.swoe.ontodeside.patomat2.Constants: Regex pattern that extracts SPARQL variable names from strings.
sparqlDelete() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Returns the value of the sparqlDelete record component.
sparqlInsert() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Returns the value of the sparqlInsert record component.
storeTransformationInput(MultipartFile, Optional<List<MultipartFile>>, TransformationInput) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.OntologyStoringController
summary() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationResult: Returns the value of the summary record component.

T

targetTriples() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Returns the value of the targetTriples record component.
targetVariables() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern
tokenize(String) - Static method in class cz.vse.swoe.ontodeside.patomat2.util.Utils: Tokenizes the specified string.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.EntityLabel: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ExampleValues: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.iri.NewEntityIriConfig: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.LoadedTransformationInput: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NameTransformation: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.OntologyDiff: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.Pattern: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInfo: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.RemotePattern: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationInput: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationResult: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.TransformationSummary: Returns a string representation of this record class.
toString() - Method in record class cz.vse.swoe.ontodeside.patomat2.rest.SortController.SortDto: Returns a string representation of this record class.
transform(TransformationSpecification) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.TransformationController
transform(TransformationSpecification) - Method in class cz.vse.swoe.ontodeside.patomat2.service.TransformationService: Executes the pattern-based transformation.
TransformationController - Class in cz.vse.swoe.ontodeside.patomat2.rest
TransformationController(TransformationService) - Constructor for class cz.vse.swoe.ontodeside.patomat2.rest.TransformationController
TransformationInput - Record Class in cz.vse.swoe.ontodeside.patomat2.model: Describes the transformation input provided by the user.
TransformationInput(String, List<String>, boolean) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.TransformationInput: Creates an instance of a TransformationInput record class.
TransformationResult - Record Class in cz.vse.swoe.ontodeside.patomat2.model: Result of transformation.
TransformationResult(Resource, TransformationSummary) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.TransformationResult: Creates an instance of a TransformationResult record class.
TransformationService - Class in cz.vse.swoe.ontodeside.patomat2.service
TransformationService(MatchService, OntologyHolder, OntologyStoringService, TransformedOntologyHolder) - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.TransformationService
TransformationSpecification - Class in cz.vse.swoe.ontodeside.patomat2.model: Specifies how the pattern-based ontology transformation should be applied.
TransformationSpecification() - Constructor for class cz.vse.swoe.ontodeside.patomat2.model.TransformationSpecification
TransformationSummary - Record Class in cz.vse.swoe.ontodeside.patomat2.model
TransformationSummary(String, String, List<NewEntity>) - Constructor for record class cz.vse.swoe.ontodeside.patomat2.model.TransformationSummary: Creates an instance of a TransformationSummary record class.
TransformedOntologyHolder - Class in cz.vse.swoe.ontodeside.patomat2.service
TransformedOntologyHolder() - Constructor for class cz.vse.swoe.ontodeside.patomat2.service.TransformedOntologyHolder

U

unsupportedSortMethodException(UnsupportedSortMethodException, HttpServletRequest) - Method in class cz.vse.swoe.ontodeside.patomat2.rest.handler.RestExceptionHandler
UnsupportedSortMethodException - Exception Class in cz.vse.swoe.ontodeside.patomat2.exception: Indicates that an unsupported sort method was specified.
UnsupportedSortMethodException(String) - Constructor for exception class cz.vse.swoe.ontodeside.patomat2.exception.UnsupportedSortMethodException
url() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.RemotePattern: Returns the value of the url record component.
userDetailsService() - Method in class cz.vse.swoe.ontodeside.patomat2.config.SecurityConfig
Utils - Class in cz.vse.swoe.ontodeside.patomat2.util
UUID - Enum constant in enum class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameFormat: UUID appended to the namespace

V

value() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.EntityLabel: Returns the value of the value record component.
value() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.ResultBinding: Returns the value of the value record component.
value() - Method in record class cz.vse.swoe.ontodeside.patomat2.rest.SortController.SortDto: Returns the value of the value record component.
valueOf(String) - Static method in enum class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameFormat: Returns the enum constant of this class with the specified name.
valueOf(String) - Static method in enum class cz.vse.swoe.ontodeside.patomat2.service.sort.Sort: Returns the enum constant of this class with the specified name.
values() - Static method in enum class cz.vse.swoe.ontodeside.patomat2.model.iri.EntityIriLocalNameFormat: Returns an array containing the constants of this enum class, in the order they are declared.
values() - Static method in enum class cz.vse.swoe.ontodeside.patomat2.service.sort.Sort: Returns an array containing the constants of this enum class, in the order they are declared.
variableName() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NameTransformation: Returns the value of the variableName record component.
variableName() - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity: Returns the value of the variableName record component.

W

withIdentifier(String) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity
withLabels(List<EntityLabel>) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.NewEntity
withLikertScore(int) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance
withNewEntities(List<NewEntity>) - Method in record class cz.vse.swoe.ontodeside.patomat2.model.PatternInstance

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